MONSARRAT, Clément; COMPAIN, Guillaume; ANDRÉ, Christophe; ENGILBERGE, Sylvain; MARTIEL, Isabelle; OLIÉRIC, Vincent; WOLFF, Philippe; BRILLET, Karl; LANDOLFO, Marie; SILVA DA VEIGA, Cyrielle; WAGNER, Jérôme*; GUICHARD, Gilles; BURNOUF, Dominique. (2021). Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J. Med. Chem, 64 (23). *: co-corresponding author.

NETTERSHEIM, Jo-Ann ; JANEL-BINTZ, Régine ; KUHN, Lauriane ; CORDONNIER, Agnès M. (2021). DNA polymerase η is a substrate for calpain: a possible mechanism for pol η retention in UV-induced replication foci. J Cell Sci. 134(13).

BICHARA, Marc; PELET, Sandrine; LAMBERT, Iain. (2021). Recombinational repair in the absence of Holliday junction resolvases in E. coli. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, 882 (11174).

Stoessel A, Groysbeck N, Guyot L, Barret L, Nominé Y, Nguekeu-Zebaze L, Bender A, Voilquin L, Lutz T, Pallaoro N, Blocat M, Deville C, Masson M, Zuber G, Chatton B, Donzeau M. (2020). Modular Conjugation of a Potent Anti-HER2 Immunotoxin Using Coassociating Peptides. Bioconjug Chem 31(10):2421-2430. doi: 10.1021/acs.bioconjchem.0c00482.

Janel-Bintz R, Kuhn L, Frit P, Chicher J, Wagner J, Haracska L, Hammann P, Cordonnier AM (2020). Proteomic Analysis of DNA Synthesis on a Structured DNA Template in Human Cellular Extracts: Interplay Between NHEJ and Replication-Associated Proteins. Proteomics 20(3-4):e1900184. doi: 10.1002/pmic.201900184.

André C, Veillard F, Wolff P, Lobstein AM, Compain G, Monsarrat C, Reichhart JM, Noûs C, Burnouf DY, Guichard G, Wagner JE (2020). Antibacterial activity of a dual peptide targeting the Escherichia coli sliding clamp and the ribosome. RSC Chem Biol 1(3):137-147. doi: 10.1039/D0CB00060D.

Yoshida K, Maekawa T, Ly NH, Fujita SI, Muratani M, Ando M, Katou Y, Araki H, Miura F, Shirahige K, Okada M, Ito T, Chatton B, Ishii S (2020). ATF7-Dependent Epigenetic Changes Are Required for the Intergenerational Effect of a Paternal Low-Protein Diet. Mol Cell 78(3):445-458.e6. doi: 10.1016/j.molcel.2020.02.028.

Vigneron M, Dietsch F, Bianchetti L, Dejaegere A, Nominé Y, Cordonnier A, Zuber G, Chatton B, Donzeau M (2019). Self-Associating Peptides for Modular Bifunctional Conjugation of Tetramer Macromolecules in Living Cells. Bioconjug Chem 30:1734-1744.

ANDRÉ, Christophe; MARTIEL, Isabelle; WOLFF, Philippe; LANDOLFO, Marie; LORBER, Bernard; SILVA DA VEIGA, Cyrielle; DEJAEGERE, Annick; DUMAS, Philippe; GUICHARD, Gilles; OLIÉRIC, Vincent; WAGNER, Jérôme; BURNOUF, Dominique. (2019) Interaction of a Model Peptide on Gram Negative and Gram Positive Bacterial Sliding Clamps. ACS Infect. Dis. 2019. h 26

Groysbeck N, Stoessel A, Donzeau M, da Silva EC, Lehmann M, Strub JM, Cianferani S, Dembélé K, Zuber G (2019). Synthesis and biological evaluation of 2.4 nm thiolate-protected gold nanoparticles conjugated to Cetuximab for targeting glioblastoma cancer cells via the EGFR. Nanotechnology 30(18):184005. doi: 10.1088/1361-6528/aaff0a.

Liu Y, Maekawa T, Yoshida K, Muratani M, Chatton B, Ishii S (2019). The Transcription Factor ATF7 Controls Adipocyte Differentiation and Thermogenic Gene Programming. iScience 13:98-112.

Liu B, Maekawa T, Yoshida K, Ly NH, Inoue K, Hasegawa A, Chatton B, Ogura A, Ishii S (2019). Telomere shortening by transgenerational transmission of TNF-α-induced TERRA via ATF7. Nucleic Acids Res 47:283-298.

Maekawa T, Liu B, Nakai D, Yoshida K, Nakamura KI, Yasukawa M, Koike M, Takubo K, Chatton B, Ishikawa F, Masutomi K, Ishii S (2018). ATF7 mediates TNF-α-induced telomere shortening. Nucleic Acids Res 46:4487-4504.

Liu Y, Maekawa T, Yoshida K, Kaneda H, Chatton B, Wakana S, Ishii S (2017). The transcription factor ATF7 mediates in vitro fertilization-induced gene expression changes in mouse liver. FEBS Open Bio 7:1598-1610.

Col E, Hoghoughi N, Dufour S, Penin J, Koskas S, Faure V, Ouzounova M, Hernandez-Vargash H, Reynoird N, Daujat S, Folco E, Vigneron M, Schneider R, Verdel A, Khochbin S, Herceg Z, Caron C, Vourc'h C (2017). Bromodomain factors of BET family are new essential actors of pericentric heterochromatin transcriptional activation in response to heat shock. Sci Rep 7:5418.

Dietsch F, Donzeau M, Cordonnier AM, Weiss E, Chatton B, Vigneron M (2017). A fast method for analyzing essential protein mutants in human cells. Biotechniques 62:80-82.

Liu B, Maekawa T, Chatton B, Ishii S (2016). In utero TNF-α treatment induces telomere shortening in young adult mice in an ATF7-dependent manner. FEBS Open Bio 6:56-63.

Desplancq D, Freund G, Conic S, Sibler AP, Didier P, Stoessel A, Oulad-Abdelghani M, Vigneron M, Wagner J, Mély Y, Chatton B, Tora L, Weiss E (2016). Targeting the replisome with transduced monoclonal antibodies triggers lethal DNA replication stress in cancer cells. Exp Cell Res 342:145-58.

Despras E, Sittewelle M, Pouvelle C, Delrieu N, Cordonnier AM, Kannouche PL (2016). Rad18-dependent SUMOylation of human specialized DNA polymerase eta is required to prevent under-replicated DNA. Nat Commun 7:13326-34.

Ahmed-Seghir S, Pouvelle C, Despras E, Cordonnier A, Sarasin A, Kannouche PL (2015). Aberrant C-terminal domain of polymerase η targets the functional enzyme to the proteosomal degradation pathway. DNA Repair 29:154–165.

Yoshida K, Maekawa T, Zhu Y, Renard-Guillet C, Chatton B, Inoue K, Uchiyama T, Ishibash K-I, Yamada T, Ohno N, Shirahige K, Okada-Hatakeyama M, Ishii S (2015). The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immune memory. Nat Immunol 16:1034-1043.

Schaeffer E, Vigneron M, Sibler AP, Oulad-Abdlghani M, Chatton B, Donzeau M (2015). ATF7 is stabilized during mitosis in a CDK1-dependent manner and contributes to cyclin D1 expression. Cell Cycle 14:2655-2666.

Baldeck N, Janel-Bintz R, Wagner J, Tissier A, Fuchs RP, Burkovics P, Haracska E, Despras E, Bichara M, Chatton B, Cordonnier AM (2015). FF483-484 motif of human Polη mediates its interaction with the POLD2 subunit of Polδ and contributes to DNA damage tolerance. Nucleic Acids Res 43:2116-2125.

Guilini C, Baehr C, Schaeffer E, Gizzi P, Rufi F, Haiech J, Weiss E, Bonnet D, Galzi JL (2015). New fluorescein precursors for live bacteria detection. Anal Chem 87:8858-8866.

Wallet C, Le Ret M, Bergdoll M, Bichara M, Dietrich A, Gualberto JM (2015). The RECG1 DNA Translocase Is a Key Factor in Recombination Surveillance, Repair, and Segregation of the Mitochondrial DNA in Arabidopsis. Plant Cell 27:2907–2925.

Roehnisch T, Then C, Nagel W, Blumenthal C, Braciak T, Donzeau M, Böhm T, Flaig M, Bourquin C, Oduncu F (2014). Chemically linked phage idiotype vaccination in the murine B cell lymphoma 1 model. J Transl Med 11:267.

Roehnisch T, Then C, Nagel W, Blumenthal C, Braciak T, Donzeau M, Böhm T, Flaig M, BourquinC, Oduncu F (2014). Phage idiotype vaccination: first phase I/II clinical trial in patients with multiple myeloma. J Transl Med 12:119

Wolff P, Amal I, Olieric V, Chaloin O, Gygli G, Ennifar E, Lorber B, Guichard G, Wagner J, Dejaegere A, Burnouf DY (2014). Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. J Med Chem 57:7565-76.

Freund G, Sibler AP, Desplancq D, Oulad-Abdelghani M, Vigneron M, Gannon J, Van Regenmortel MH, Weiss E (2013). Targeting endogenous nuclear antigens by electrotransfer of monoclonal antibodies in living cells. MAbs 5:518-22.

Janel-Bintz R, Wagner J, Haracska L, Mah-Becherel MCM, Bichara M, Fuchs RP, Cordonnier AM (2012). Evidence for a Rad18-independent frameshift mutagenesis pathway in human cell-free extracts. PLoS ONE  7:e36004.

Miller-Messmer M, Kühn K, Bichara M, Le Ret M, Imbault P, Gualberto JM (2012). RecA-dependent DNA repair results in increased heteroplasmy of the Arabidopsis mitochondrial genome. Plant Physiol 159:211–226.

Hazoumé A, Naderi K, Candolfi E, Kédinger C, Chatton B, Vigneron M (2011). A genetic analysis of Plasmodium falciparum RNA polymerase II subunits in yeast. Mol Biochem Parasitol 176:127-130.

Diring J, Camuzeaux B, Donzeau M, Vigneron M, Rosa-Calatrava M, Kédinger C, Chatton B (2011). A Cytoplasmic Negative Regulator Isoform of ATF7 Impairs ATF7 and ATF2 Phosphorylation and Transcriptional Activity. PLoS One 6:e23351.

Bichara M, Meier M, Wagner J, Cordonnier A, Lambert IB (2011). Postreplication repair mechanisms in the presence of DNA adducts in Escherichia coli. Mutat Res 727:104–122.

Wolff P, Olieric V, Briand JP, Chaloin O, Dejaegere A, Dumas P, Ennifar E, Guichard G, Wagner J, Burnouf DY (2011). Structure-based design of short peptide ligands binding onto the E. coli processivity ring. J Med Chem 54:4627–4637.

Maekawa T, Kim S, Nakai D, Makino C, Takagi T, Ogura H, Yamada K, Chatton B, Ishii S (2010). Social isolation stress induces ATF-7 phosphorylation and impairs silencing of the 5-HT 5B receptor gene. EMBO J 29:196-208.

Schmutz V, Janel-Bintz R, Wagner J, Biard D, Shiomi N, Fuchs RP, Cordonnier AM (2010). Role of the ubiquitin-binding domain of Pol eta in Rad18-independent translesion DNA synthesis in human cell extracts. Nucleic Acids Res 38:6456-6465.

Tissier A, Janel-Bintz R, Coulon S, Klaile E, Kannouche P, Fuchs RP, Cordonnier AM (2010). Crosstalk between replicative and translesional DNA polymerases : PDIP38 interacts directly with Poleta. DNA Repair 5:922-8.

Bichara M, Fuchs RP, Cordonnier A, Lambert IB (2009). Preferential post replication repair of DNA lesions situated on the leading strand of plasmids in E. coli. Mol Microbiol 71:305-14.

Burnouf DY, Wagner JE (2009). Kinetics of deoxy-CTP incorporation opposite a dG-C8-N-2-aminofluorene adduct by a high-fidelity DNA polymerase. J Mol Biol 386:951-61.

Wagner J, Etienne H, Fuchs RP, Cordonnier A, Burnouf D (2009). Distinct beta-clamp interactions govern the activities of the Y family PolIV DNA polymerases. Mol Microbiol 74:1143-1151.

Camuzeaux B, Diring J, Hamard PJ, Oulad-Abdelghani M, Donzeau M, Vigneron M, Kedinger C, Chatton B (2008). p38beta2-mediated phosphorylation and sumoylation of ATF7 are mutually exclusive. J Mol Biol 384:980-991.

Bichara M, Pinet I, Lambert IB, Fuchs RP (2007). RecA-mediated excision repair : a novel mechanism for repairing DNA lesions at sites of arrested DNA synthesis. Mol Microbiol 65:218-29.

Hamard PJ, Boyer-Guittaut M, Camuzeaux B, Dujardin D, Hauss C, Oelgeschläger T, Vigneron M, Kedinger C, Chatton B (2007). Sumoylation delays the ATF7 transcription factor subcellular localization and inhibits its transcriptional activity. Nucleic Acids Res 35:1134-44.

Schmutz V, Wagner J, Janel-Bintz R, Fuchs RP, Cordonnier AM (2007). Requirements for PCNA monoubiquitination in human cell-free extracts. DNA Repair 6:1726-31.

Bichara M, Pinet I, Origas M, Fuchs RP (2006). Inactivation of recG stimulates the RecF pathway during lesion-induced recombination in E. coli. DNA Repair 5:129-37.

Bichara M, Wagner J, Lambert IB (2006). Mechanisms of tandem repeat instability in bacteria. Mutat Res 598:144-63.

Benga WJ, Grandemange S, Shpakovski GV, Shematorova EK, Kedinger C, Vigneron M (2005). Distinct regions of RPB11 are required for heterodimerization with RPB3 in human and yeast RNA polymerase II. Nucleic Acids Res 33:3582-90.

Hamard PJ, Dalbies-Tran R, Hauss C, Davidson I, Kedinger C, Chatton B (2005). A functional interaction between ATF7 and TAF12 that is modulated by TAF4. Oncogene 24:3472-83.

Jolly C, Metz A, Govin J, Vigneron M, Turner BM, Khochbin S, Vourc’h C (2004). Stress-induced transcription of satellite III repeats. J Cell Biol 164:25-33.

Slavin DA, Koritschoner NP, Prieto CC, Lopez-Diaz FJ, Chatton B, Bocco JL (2004). A new role for the Kruppel-like transcription factor KLF6 as an inhibitor of c-Jun proto-oncoprotein function. Oncogene 23:8196-205.

Tissier A, Kannouche P, Reck MP, Lehmann AR, Fuchs RP, Cordonnier A (2004). Co-localization in replication foci and interaction of human Y-family members, DNA polymerase pol eta and REVl protein. DNA Repair 3:1503-14.