Liste des publications

2024

Delaitre C, Boisbrun M, Acherar S, Dias A, Kleinclauss A, Achard M, Colin M, Nguyen TM, Humbert N, Chmeis K, Martinez KL, Gilles N, Robin P, Lecat S*, Dupuis F* (2024). Synthesis and Pharmacological Characterization of Fluorescent Ligands Targeting the Angiotensin II Receptors Derived from Agonists, β-Arrestin-Biased Agonists, and Antagonists. J Med Chem Nov 11 Online ahead of print. doi: 10.1021/acs.jmedchem.4c01693.

Balaramane D, Spill YG, Weber M*, Bardet AF* (2024). MethyLasso: a segmentation approach to analyze DNA methylation patterns and identify differentially methylated regions from whole-genome datasets. Nucleic Acids Res 18:gkae880. doi: 10.1093/nar/gkae880.

Schalk IJ (2024). Bacterial siderophores: diversity, uptake pathways and applications. Nat Rev Microbiol Sep 5 Online ahead of print. doi : 10.1038/s41579-024-01090-6.

Brady S, Poulton J, Muller S (2024). Inclusion body myositis: Correcting mitochondfrial and lysosomal autophagy impairment as a potential therapeutic strategy. Autoimmun Rev 19:103644. doi: 10.1016/j.autrev.2024.103644.

Li C, Moro S, Shostak K, O'Reilly FJ, Donzeau M, Graziadei A, McEwen AG, Desplancq D, Poussin-Courmontagne P, Bachelart T, Fiskin M, Berrodier N, Pichard S, Brillet K, Orfanoudakis G, Poterszman A, Torbeev V, Rappsilber J, Davey NE, Chariot A, Zanier K (2024). Molecular mechanism of IKK catalytic dimer docking to NF-κB substrates. Nat Commun 15(1):7692. doi: 10.1038/s41467-024-52076-0.

Faucon A, Renault J, Josts I, Couchot J, Renaud JL, Hoegy F, Plésiat P, Tidow H, Gaillard S, Mislin GLA (2024). Synthesis and antibacterial properties under blue LED light of conjugates between the siderophore desferrioxamine B (DFOB) and an Iridium(III) complex. Bioorg Med Chem 112:117842. doi: 10.1016/j.bmc.2024.117842.

Will V, Frey C, Normant V, Kuhn L, Chicher J, Volck F, Schalk IJ (2024). The role of FoxA, FiuA, and FpvB in iron acquisition via hydroxamate-type siderophores in Pseudomonas aeruginosa. Sci Rep 14(1):18795. doi: 10.1038/s41598-024-69152-6.

Rafiq S, Mungure I, Banz Y, Niklaus NJ, Kaufmann T, Müller S, Jacquel A, Robert G, Auberger P, Torbett BE, Muller S, Tschan MP, Humbert M (2024). HSPA8 Chaperone Complex Drives Chaperone-Mediated Autophagy Regulation in Acute Promyelocytic Leukemia Cell Differentiation. Pharmacology 109(4):216-230. doi: 10.1159/000537864.

Bonam SR, Mastrippolito D, Georgel P, Muller S (2024). Pharmacological targets at the lysosomal autophagy-NLRP3 inflammasome crossroads. Trends Pharmacol Sci 45(1):81-101. doi: 10.1016/j.tips.2023.11.005.

Lasalo M, Jauffrais T, Georgel P, Matsui M (2024). Marine Microorganism Molecules as Potential Anti-Inflammatory Therapeutics. Mar Drugs 22(9):405. doi: 10.3390/md22090405.

Birmpili D, Charmarké-Askar I, Spenlé C, Riché S, Pham-Van LD, Kuntzel T, Xhurxhi T, Riou A, Bonnet D, Bagnard D (2024). Fluorinated apelin-13 mediates neuroprotective effects in multiple sclerosis models. Neurobiol Dis 198:106552. doi: 10.1016/j.nbd.2024.106552.

Charmarke-Askar I, Spenlé C, Bagnard D (2024). Complementary strategies to be used in conjunction with animal models for multiple sclerosis drug discovery: adapting preclinical validation of drug candidates to the need of remyelinating strategies. Expert Opin Drug Discov 22:1-10. doi: 10.1080/17460441.2024.2382180.

Nisco A, Tolomeo M, Scalise M, Zanier K, Barile M (2024). Exploring the impact of flavin homeostasis on cancer cell metabolism. Biochim Biophys Acta Rev Cancer 1879(5):189149. doi: 10.1016/j.bbcan.2024.189149.

Manko H, Steffan T, Gasser V, Mély Y, Schalk I, Godet J (2024). PvdL Orchestrates the Assembly of the Nonribosomal Peptide Synthetases Involved in Pyoverdine Biosynthesis in Pseudomonas aeruginosa. Int J Mol Sci 25(11):6013. doi: 10.3390/ijms25116013.

Loubaton R, Champagnat N, Vallois P, Vallat L (2024). MultiRNAflow: integrated analysis of temporal RNA-seq data with multiple biological conditions. Bioinformatics 40(5):btae315. doi: 10.1093/bioinformatics/btae315.

De Neve J, Elhabazi K, Gonzalez S, Herby C, Schneider S, Utard V, Fellmann-Clauss R, Petit-Demouliere N, Lecat S, Kremer M, Ces A, Daubeuf F, Martin C, Ballet S, Bihel F, Simonin F (2024). Multitarget μ-Opioid Receptor Agonists─Neuropeptide FF Receptor Antagonists Induce Potent Antinociception with Reduced Adverse Side Effects. J Med Chem 67(9):7603-7619. doi: 10.1021/acs.jmedchem.4c00442.

Bachelart T, Kumar S, Jouin A, Yousef M, Kieffer B, Torbeev V (2024). Design, Synthesis and Catalytic Activity of Protein Containing Thiotyrosine as an Active Site Residue. Chembiochem 17:e202400148. doi: 10.1002/cbic.202400148.

Grelich-Mucha M, Bachelart T, Torbeev V, Ożga K, Berlicki Ł, Olesiak-Bańska J (2024). Amyloid engineering - how terminal capping modifies morphology and secondary structure of supramolecular peptide aggregates. Biomater Sci 12(6):1590-1602. doi: 10.1039/d3bm01641b.

Baybekov S, Llompart P, Marcou G, Gizzi P, Galzi JL, Ramos P, Saurel O, Bourban C, Minoletti C, Varnek A (2024). Kinetic solubility: Experimental and machine-learning modeling perspectives. Mol Inform 43(2):e202300216. doi: 10.1002/minf.202300216.

Puja H, Bianchetti L, Revol-Tissot J, Simon N, Shatalova A, Nommé J, Fritsch S, Stote RH, Mislin GLA, Potier N, Dejaegere A, Rigouin C (2024). Biosynthesis of a clickable pyoverdine via in vivo enzyme engineering of an adenylation domain. Microb Cell Fact 23(1):207. doi: 10.1186/s12934-024-02472-4.

Vidal FX, Deloche A, Zeder-Lutz G, Hideux M, Wagner R, Dugas V, Demesmay C (2024). Ligand Screening of Membrane Proteins Embedded in Nanodiscs: How to Manage Non-Specific Interactions in Weak Affinity Chromatography? Molecules 29(12):2814. doi: 10.3390/molecules29122814.

Varol A, Klauck SM, Dantzer F, Efferth T (2024). Enhancing cisplatin drug sensitivity through PARP3 inhibition: The influence on PDGF and G-coupled signal pathways in cancer. Chem Biol Interact 398:111094. doi: 10.1016/j.cbi.2024.111094.

Toussaint K, Appert-Collin A, Vanalderwiert L, Bour C, Terryn C, Spenlé C, Van Der Heyden M, Roumieux M, Maurice P, Romier-Crouzet B, Sartelet H, Duca L, Blaise S, Bennasroune A (2024). Inhibition of neuraminidase-1 sialidase activity by interfering peptides impairs insulin receptor activity in vitro and glucose homeostasis in vivo. J Biol Chem 300(6):107316. doi: 10.1016/j.jbc.2024.107316.

Rasheed AAB, Birling MC, Lauria G, Gaveriaux-Ruff C, Herault Y (2024). The COL6A5-p.Glu2272* mutation induces chronic itch in mice. Mamm Genome 35(2):122-134. doi: 10.1007/s00335-024-10032-9.

Juncker T, Richert L, Masson M, Zuber G, Chatton B, Donzeau M (2024). Tracing endogenous proteins in living cells through electrotransfer of mRNA encoding chromobodies. Biotechnol J 19(2):e2300548. doi: 10.1002/biot.202300548.

Frossard N, Coïc A, Saguet T, Coïc A, Himbert F, Do QT, Galzi JL, Suehs C, Guillaumet G, Bonnet P, Bernard P (2024). Randomized double-blind placebo-controlled cosmetic trial of a topical first-in-class Neutraligand targeting the chemokine TARC/CCL17 in mild-to-moderate atopic dermatitis. Int J Cosmet Sci 46(3):468-477. doi: 10.1111/ics.12948.

Jacotot E, Talamini L, Bonam SR, Vieira AT, Fremeaux-Bacchi V, Radic M, Dragon-Durey MA, Lozano JM, Saia RS, Muller S (2023). Innate immune responses in COVID-19. In Autoimmunity, COVID-19, Post-COVID19 syndrome and COVID-19 vaccination, 1st Edition (Eds: Shoenfeld Y, Dotan A); chapter 3 pages 63-128. doi: 10.1016/B978-0-443-18566-3.00041-4.

Dotan A, Kanduc D, Muller S, Shoenfeld Y (2023). SARS-CoV-2, fertility-related autoantibodies and reproductive injury. In Autoimmunity, COVID-19, Post-COVID19 syndrome and COVID-19 vaccination, 1st Edition (Eds: Shoenfeld Y, Dotan A); chapter 29 pages 595-601. doi: 10.1016/B978-0-443-18566-3.00024-4.

Adiguzel Y, Mahroum N, Muller S, Blank M, Halpert G, Shoenfeld Y (2023). Shared Pathogenicity Features and Sequences between EBV, SARS-CoV-2, and HLA Class I Molecule-binding Motifs with a Potential Role in Autoimmunity. Clin Rev Allergy Immunol 65:206-230. doi: 10.1007/s12016-023-08962-4.

Renaudineau Y, Muller S, Hedrich CM, Chauveau D, Bellière J, De Almeida S, Damoiseaux J, Scherlinger M, Guery JC, Sailler L, Bost C (2023). Immunological and translational key challenges in systemic lupus erythematosus: A symposium update. J Transl Autoimmun 6:100199. doi: 10.1016/j.jtauto.2023.100199.

Muller S (2023). The abscopal effect: Implications for drug discovery in autoimmunity. Autoimmun Rev 22:103315. doi: 10.1016/j.autrev.2023.103315.

Gros F, Muller S (2023). The role of lysosomes in metabolic and autoimmune diseases. Nat Rev Nephrol 19(6):366-383. doi: 10.1038/s41581-023-00692-2.

Lozano JM, Muller S (2023). Monkeypox: Potential vaccine development strategies. Trends Pharmacol Sci 44:15-19. doi: 10.1016/j.tips.2022.10.005.

Groysbeck N, Hanss V, Donzeau M, Strub JM, Cianférani S, Spehner D, Bahri M, Ersen O, Eltsov M, Schultz P, Zuber G (2023). Bioactivated and PEG-Protected Circa 2 nm Gold Nanoparticles for in Cell Labelling and Cryo-Electron Microscopy. Small Methods 7(6):e2300098. doi: 10.1002/smtd.202300098.

Taverniti V, Krynska H, Venuti A, Straub ML, Sirand C, Lohmann E, Romero-Medina MC, Moro S, Robitaille A, Negroni L, Martinez-Zapien D, Masson M, Tommasino M, Zanier K (2023). The E2F4/p130 Repressor Complex Cooperates with Oncogenic ΔNp73α To Inhibit Gene Expression in Human Papillomavirus 38 E6/E7-Transformed Keratinocytes and in Cancer Cells. mSphere 8(2):e0005623. doi: 10.1128/msphere.00056-23.

Bruyere D, Roncarati P, Lebeau A, Lerho T, Poulain F, Hendrick E, Pilard C, Reynders C, Ancion M, Luyckx M, Renard M, Jacob Y, Twizere JC, Peiffer R, Peulen O, Delvenne P, Hubert P, McBride A, Gillet N, Masson M, Herfs M (2023). Human papillomavirus E6/E7 oncoproteins promote radiotherapy-mediated tumor suppression by globally hijacking host DNA damage repair. Theranostics 13(3):1130-1149. doi: 10.7150/thno.78091.

Rizzato M, Mao F, Chardon F, Lai KY, Villalonga-Planells R, Drexler HCA, Pesenti ME, Fiskin M, Roos N, King KM, Li S, Gamez ER, Greune L, Dersch P, Simon C, Masson M, Van Doorslaer K, Campos SK, Schelhaas M (2023). Master mitotic kinases regulate viral genome delivery during papillomavirus cell entry. Nat Commun 14(1):355. doi: 10.1038/s41467-023-35874-w.

Spragge F, Bakkeren E, Jahn MT, B N Araujo E, Pearson CF, Wang X, Pankhurst L, Cunrath O*, Foster KR* (2023). Microbiome diversity protects against pathogens by nutrient blocking. Science 382(6676):eadj3502. doi: 10.1126/science.adj3502.

Hubert T, Madec M, Schalk IJ (2023). Experimental and computational methods to highlight behavioural variations in TonB-dependent transporter expression in Pseudomonas aeruginosa versus siderophore concentration. Sci Rep 13(1):20015. doi: 10.1038/s41598-023-46585-z.

Deloche A, Vidal FX, Jammas L, Wagner R, Dugas V, Demesmay C (2023). Extending the Affinity Range of Weak Affinity Chromatography for the Identification of Weak Ligands Targeting Membrane Proteins. Molecules 28(20):7113. doi: 10.3390/molecules28207113.

Will V, Gasser V, Kuhn L, Fritsch S, Heinrichs DE, Schalk IJ (2023). Siderophore specificities of the Pseudomonas aeruginosa TonB-dependent transporters ChtA and ActA. FEBS Lett 597(23):2963-2974. doi: 10.1002/1873-3468.14740.

Olshvang E, Fritsch S, Scholtyssek OC, Schalk IJ, Metzler-Nolte N (2023). Vectorization via Siderophores Increases Antibacterial Activity of K(RW)3 Peptides against Pseudomonas aeruginosa. Chemistry 29(50):e202300364. doi: 10.1002/chem.202300364.

Bencsics M, Bányai B, Ke H, Csépányi-Kömi R, Sasvári P, Dantzer F, Hanini N, Benkő R, Horváth EM (2023). PARP2 downregulation in T cells ameliorates lipopolysaccharide-induced inflammation of the large intestine. Front Immunol 14:1135410. doi: 10.3389/fimmu.2023.1135410.

Kuntzel T, Spenlé C, Pham-Van LD, Birmpili D, Riou A, Loeuillet A, Charmarke-Askar I, Bagnard D (2023). Implication of the Transmembrane Domain in the Interleukin 10 Receptor Platform Oligomerisation. Cells 12(10):1361. doi: 10.3390/cells12101361.

Puja H, Mislin GLA, Rigouin C (2023). Engineering Siderophore Biosynthesis and Regulation Pathways to Increase Diversity and Availability. Biomolecules 13(6):959. doi: 10.3390/biom13060959.

Juncker T, Chatton B, Donzeau M (2023). The Prodigious Potential of mRNA Electrotransfer as a Substitute to Conventional DNA-Based Transient Transfection. Cells 12(12):1591. doi: 10.3390/cells12121591.

Forster A, Graulier G, Schalk IJ, Fechter P (2023). Improved engineering of Pseudomonas aeruginosa to study the adaptation of pyoverdine production under intra- or inter- specific bacterial competition. J Microbiol Methods 210:106753. doi: 10.1016/j.mimet.2023.106753.

Thirunavukkarasu S, Ahmed M, Rosa BA, Boothby M, Cho SH, Rangel-Moreno J, Mbandi SK, Schreiber V, Gupta A, Zuniga J, Mitreva M, Kaushal D, Scriba TJ, Khader SA (2023). Poly(ADP-ribose) polymerase 9 mediates early protection against Mycobacterium tuberculosis infection by regulating type I IFN production. J Clin Invest 133(12):e158630. doi: 10.1172/JCI158630.

Renaudineau Y, Muller S, Hedrich CM, Chauveau D, Belliere J, De Almeida S, Damoiseaux J, Scherlinger M, Guery JC, Sailler L, Bost C (2023). Immunological and translational key challenges in systemic lupus erythematosus: a symposium update. J Transl Autoimmunity 6:100199. doi: 10.1016/j.jtauto.2023.100199.

Al Adhami H, Vallet J, Schaal C, Schumacher P, Bardet AF, Dumas M, Chicher J, Hammann P, Daujat S*, Weber M* (2023). Systematic identification of factors involved in the silencing of germline genes in mouse embryonic stem cells. Nucleic Acids Res11:gkad071. doi: 10.1093/nar/gkad071.

Zeder-Lutz G, Bornert O, Fellmann-Clauss R, Knittel-Obrecht A, Tranchant T, Bouteben S, Kaeffer J, Quillet R, Villa P, Wagner R, Lecat S, Simonin F (2023). Characterization of anti-GASP motif antibodies that inhibit the interaction between GPRASP1 and G protein-coupled receptors. Anal Biochem 665:115062. doi: 10.1016/j.ab.2023.115062.

Schalk IJ, Perraud Q (2023). Pseudomonas aeruginosa and its multiple strategies to access iron. Environ Microbiol 25:811-831. doi: 10.1111/1462-2920.16328.

Peukert C, Gasser V, Orth T, Fritsch S, Normant V, Cunrath O, Schalk IJ*, Brönstrup M* (2023). Trojan Horse Siderophore Conjugates Induce Pseudomonas aeruginosa Suicide and Qualify the TonB Protein as a Novel Antibiotic Target. J Med Chem 66:553-576. doi: 10.1021/acs.jmedchem.2c01489.

Amé JC, Nguekeu-Zebase L, Harwood D, Yildirim Z, Roegel L, Boos A, Dantzer F (2023). Purification of Recombinant Human PARP-3. Methods Mol Biol 2609:419-441. doi: 10.1007/978-1-0716-2891-1_26.

Amé JC, Dantzer F (2023). Purification of Recombinant Human PARG and Activity Assays. Methods Mol Biol 2609:399-418. doi: 10.1007/978-1-0716-2891-1_25.

Galindo-Campos MA, Lutfi N, Bonnin S, Martínez C, Velasco-Hernandez T, García-Hernández V, Martin-Caballero J, Ampurdanés C, Gimeno R, Colomo L, Roue G, Guilbaud G, Dantzer F, Navarro P, Murga M, Fernandez-Capetillo O, Bigas A, Menendez P, Sale J, Yélamos J (2022). Distinct roles for PARP-1 and PARP-2 in c-Myc-driven B-cella lymphoma in mice. Blood 139:228-239. doi: 10.1182/blood.2021012805.

Luscher A, Gasser V, Bumann D, Mislin GLA, Schalk IJ, Köhler T (2022). Plant-Derived Catechols Are Substrates of TonB-Dependent Transporters and Sensitize Pseudomonas aeruginosa to Siderophore-Drug Conjugates. mBio 13:e0149822. doi: 10.1128/mbio.01498-22.

Birmpili D, Charmarke Askar I, Pham-Van LD, Kuntzel T, Spenlé C, Riou A, Bagnard D (2022). Toward a Combination of Biomarkers for Molecular Characterization of Multiple Sclerosis. Int J Mol Sci 23(22):14000. doi: 10.3390/ijms232214000.

Birmpili D, Charmarke Askar I, Bigaut K, Bagnard D (2022). The Translatability of Multiple Sclerosis Animal Models for Biomarkers Discovery and Their Clinical Use. Int J Mol Sci 23(19):11532. doi: 10.3390/ijms231911532.

Faucon AL, Hoegy F, Werle N, Gourlaouen C, Mislin GLA (2022). Dipyridylamine-acetamide (Dpaa): A primary amine protecting group orthogonally cleavable under acidic conditions in the presence of t-butyloxycarbonyl (Boc) and t-butylester. Tetrahedron Letters 96:153758. doi: 10.1016/j.tetlet.2022.153758.

Brun S, De Sèze J, Muller S (2022). CIDP: Current treatments and identification of targets for future specific therapeutic intervention. Immuno 2:118-131. doi: 10.3390/immuno2010009.

Thurner L, Fadle N, Regitz E, Preuss KD, Neumann F, Cetin O, Schormann C, Hoffmann MC, Herr C, Kheiroddin P, Rixecker TM, Bals R, Muller S, Thurner B, Kessel C, Kabesch M, Bewarder M, Heyne K, Lensch C, Kos IA (2022). Autoantibodies against SUMO1-DHX35 in long-COVID. J Transl Autoimmun 5:100171. doi: 10.1016/j.jtauto.2022.100171.

Akiyama K, Aung KT, Talamini L, Huck O, Kuboki T, Muller S (2022). Therapeutic effects of peptide P140 in a mouse periodontitis model. Cell Mol Life Sci 79:518. doi: 10.1007/s00018-022-04537-2.

Fernandes CAH, Zuniga D, Fagnen C, Kugler V, Scala R, Péhau-Arnaudet G, Wagner R, Perahia D, Bendahhou S, Vénien-Bryan C (2022). Cryo-electron microscopy unveils unique structural features of the human Kir2.1 channel. Sci Adv 8(38):eabq8489. doi: 10.1126/sciadv.abq8489.

Xue Y, Kremer M, Muniz Moreno MDM, Chidiac C, Lorentz R, Birling MC, Barrot M, Herault Y, Gaveriaux-Ruff C (2022). The Human SCN9AR185H Point Mutation Induces Pain Hypersensitivity and Spontaneous Pain in Mice. Front Mol Neurosci 15:913990. doi: 10.3389/fnmol.2022.913990.

Poirson J, Suarez IP, Straub ML, Cousido-Siah A, Peixoto P, Hervouet E, Foster A, Mitschler A, Mukobo N, Chebaro Y, Garcin D, Recberlik S, Gaiddon C, Altschuh D, Nominé Y, Podjarny A, Trave G, Masson M (2022). High-Risk Mucosal Human Papillomavirus 16 (HPV16) E6 Protein and Cutaneous HPV5 and HPV8 E6 Proteins Employ Distinct Strategies To Interfere with Interferon Regulatory Factor 3-Mediated Beta Interferon Expression. J Virol 96(10):e0187521. doi: 10.1128/jvi.01875-21.

Abdallah B, Seguin C, Aubert E, Ait BenHassou H, Sbabou L, Choulier L, Vonthron C, Schalk IJ, Mislin GLA, Fournel S, Pitchon V, Fechter P (2022). Past mastering of metal transformation enabled physicians to increase their therapeutic potential. J Trace Elem Med Biol 71:126926. doi: 10.1016/j.jtemb.2022.126926.

Takahashi DT, Gadelle D, Agama K, Kiselev E, Zhang H, Yab E, Petrella S, Forterre P, Pommier Y, Mayer C (2022). Topoisomerase I (TOP1) dynamics: conformational transition from open to closed states. Nat Commun 13:59. doi: 10.1038/s41467-021-27686-7.

Galvão I, Mastrippolito D, Talamini L, Aganetti M, Rocha V, Verdot C, Mendes V, de Oliveira VLS, Braga AD, Martins VD, de Faria AMC, Amaral FA, Georgel P, Vieira AT, Muller S (2022). The therapeutic effect of phosphopeptide P140 attenuates inflammation induced by uric acid crystals in gout arthritis mouse model. Cells 11:3709. doi: 10.3390/cells11233709.

Moeglin E, Barret L, Chatton B, Donzeau M (2022). Modular Site-Specific Conjugation of Nanobodies Using Two Co-Associating Tags. Int J Mol Sci 23(22):14405. doi: 10.3390/ijms232214405.

Nguekeu-Zebaze L, Hanini N, Noll A, Wadier N, Amé JC, Roegel L, Dantzer F (2022). PARP3 supervises G9a-mediated repression of adhesion and hypoxia-responsive genes in glioblastoma cells. Sci Rep 12:15534. doi: 10.1038/s41598-022-19525-6.

Radic M, Muller S (2022). LL-37, a Multi-Faceted Amphipathic Peptide Involved in NETosis. Cells 11(15):2463. doi: 10.3390/cells11152463.

Moynié L, Hoegy F, Milenkovic S, Munier M, Paulen A, Gasser V, Faucon AL, Zill N, Naismith JH, Ceccarelli M, Schalk IJ, Mislin GLA (2022). Hijacking of the enterobactin pathway by a synthetic catechol vector designed for oxazolidinone antibiotic delivery in Pseudomonas aeruginosa. ACS Infect Dis 8:1894-1904. doi: 10.1021/acsinfecdis.2c00202.

Barret L, Schubeis T, Kugler V, Guyot L, Pintacuda G, Wagner R (2022). Production and Preparation of Isotopically Labeled Human Membrane Proteins in Pichia pastoris for Fast-MAS-NMR Analyses. Methods Mol Biol 2507:201-221. doi: 10.1007/978-1-0716-2368-8_11.

Lemare M, Puja H, David SR, Mathieu S, Ihiawakrim D, Geoffroy VA, Rigouin C (2022). Engineering siderophore production in Pseudomonas to improve asbestos weathering. Microb Biotechnol 15:2351-2363. doi: 10.1111/1751-7915.14099.

Schall N, Talamini L, Wilhelm M, Jouvin-Marche E, Muller S (2022). P140 peptide leads to clearance of autoreactive lymphocytes and normalizes immune response in lupus-prone mice. Front Immunol 13:904669. doi: 10.3389/fimmu.2022.904669.

Fritsch S, Gasser V, Peukert C, Pinkert L, Kuhn L, Perraud Q, Normant V, Brönstrup M, Schalk IJ (2022). Uptake Mechanisms and Regulatory Responses to MECAM- and DOTAM-Based Artificial Siderophores and Their Antibiotic Conjugates in Pseudomonas aeruginosa. ACS Infect Dis 8(6):1134-1146. doi: 10.1021/acsinfecdis.2c00049.

Dura M, Teissandier A, Armand M, Barau J, Lapoujade C, Fouchet P, Bonneville L, Schulz M, Weber M, Baudrin LG, Lameiras S, Bourc'his D (2022). DNMT3A-dependent DNA methylation is required for spermatogonial stem cells to commit to spermatogenesis. Nat Genet 54:469-480. doi: 10.1038/s41588-022-01040-z.

Rigo R, Chelbi R, Agopian J, Letard S, Griffon A, Ghamlouch H, Vernerey J, Ladopoulos V, Voisset E, De Sepulveda P, Guittard G, Nunès JA, Bidaut G, Göttgens B, Weber M, Bernard OA, Dubreuil P, Soucie E (2022). TET2 regulates immune tolerance in chronically activated mast cells. JCI Insight 7:e154191. doi: 10.1172/jci.insight.154191.

Detilleux D, Spill YG, Balaramane D, Weber M*, Bardet AF* (2022). Pan-cancer predictions of transcription factors mediating aberrant DNA methylation. Epigenetics Chromatin 15:10. doi: 10.1186/s13072-022-00443-w.

Al Adhami H, Bardet AF, Dumas M, Cleroux E, Guibert S, Fauque P, Acloque H, Weber M (2022). A comparative methylome analysis reveals conservation and divergence of DNA methylation patterns and functions in vertebrates. BMC Biol 20:70. doi: 10.1186/s12915-022-01270-x.

Retnakumar SV, Geesala R, Bretin A, Tourneur-Marsille J, Ogier-Denis E, Maretzky T, Nguyen HTT, Muller S (2022) Targeting the endo-lysosomal autophagy pathway to treat inflammatory bowel diseases. J Autoimmun128:102814. doi: 10.1016/j.jaut.2022.102814.

Wegmann S, Meister C, Renz C, Yakoub G, Wollscheid HP, Takahashi DT, Mikicic I, Beli P, Ulrich HD (2022). Linkage reprogramming by tailor-made E3s reveals polyubiquitin chain requirements in DNA-damage bypass. Mol Cell 82(8):1589-1602.e5. doi: 10.1016/j.molcel.2022.02.016.

Kuntzel T, Bagnard D (2022). Manipulating Macrophage/Microglia Polarization to Treat Glioblastoma or Multiple Sclerosis. Pharmaceutics 14(2):344. doi: 10.3390/pharmaceutics14020344.

Gerum M, Simonin F (2022). Behavioral characterization, potential clinical relevance and mechanisms of latent pain sensitization. Pharmacol Ther 233:108032. doi: 10.1016/j.pharmthera.2021.108032.

Roche B, Garcia-Rivera MA, Normant V, Kuhn L, Hammann P, Brönstrup M, Mislin GLA, Schalk IJ (2022). A role for PchHI as the ABC transporter in iron acquisition by the siderophore pyochelin in Pseudomonas aeruginosa. Environ Microbiol 24(2):866-877. doi: 10.1111/1462-2920.15811.

Bonam SR, Tranchant C, Muller S (2021). Autophagy-Lysosomal Pathway as Potential Therapeutic Target in Parkinson’s Disease. Cells 10:3547. doi: 10.3390/cells10123547.

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Maekawa T, Liu B, Nakai D, Yoshida K, Nakamura KI, Yasukawa M, Koike M, Takubo K, Chatton B, Ishikawa F, Masutomi K, Ishii S (2018). ATF7 mediates TNF-α-induced telomere shortening. Nucleic Acids Res 46:4487-4504.

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Poirson J, Biquand E, Straub ML, Cassonnet P, Nominé Y, Jones L, van der Werf S, Travé G, Zanier K, Jacob Y, Demeret C, Masson M (2017). Mapping the interactome of HPV E6 and E7 oncoproteins with the ubiquitin-proteasome system. FEBS J284:3171-3201.

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Gasser V, Guillon L, Cunrath O, Schalk IJ (2015). Cellular organization of siderophore biosynthesis in Pseudomonas aeruginosa : Evidence for siderosomes. J Inorg Biochem 148:27-34.

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Brieño-Enríquez MA, García-López J, Cárdenas DB, Guibert S, Cleroux E, Ded L, Hourcade Jde D, Peknicová J, Weber M, Del Mazo J (2015). Exposure to Endocrine Disruptor Induces Transgenerational Epigenetic Deregulation of MicroRNAs in Primordial Germ Cells. PLoS One 10:e0124296.

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Lecat S, Matthes HW, Pepperkok R, Simpson JC, Galzi JL (2015). A Fluorescent Live Imaging Screening Assay Based on Translocation Criteria Identifies Novel Cytoplasmic Proteins Implicated in G Protein-coupled Receptor Signaling Pathways. Mol Cell Proteomics 14:1385-1399.

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Baldeck N, Janel-Bintz R, Wagner J, Tissier A, Fuchs RP, Burkovics P, Haracska E, Despras E, Bichara M, Chatton B, Cordonnier AM (2015). FF483-484 motif of human Polη mediates its interaction with the POLD2 subunit of Polδ and contributes to DNA damage tolerance. Nucleic Acids Res 43:2116-2125.

Bihel F, Humbert JP, Schneider S, Bertin I, Wagner P, Schmitt M, Laboureyras E, Petit-Demoulière B, Schneider E, Mollereau C, Simonnet G, Simonin F*, Bourguignon JJ* (2015). Development of a peptidomimetic antagonist of the neuropeptide FF receptors for the prevention of opioid-induced hyperalgesia. ACS Chem Neurosci6:438-445.

Farrés J, Lacune L, Martin-Caballero J, Martínez C, Lozano JJ, Ampurdanés C, López-Contreras AJ, Florensa L, Navarro J, Ottina E, Dantzer F, Schreiber V, Villunger A, Fernández-Capetillo O, Yélamos J (2015). PARP-2 sustains erythropoiesis in mice by limiting replicative stress in erythroid progenitors. Cell Death Differ 22:1144-1157.

Auclair G, Guibert S, Bender A, Weber M (2014). Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse. Genome Biol15:545.

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Elhabazi K, Ayachi S, Ilien B, Simonin F (2014). Assessment of morphine-induced hyperalgesia and analgesic tolerance in mice using thermal and mechanical nociceptive modalities. J Vis Exp e51264.

Romain B, Hachet-Haas M, Rohr S, Brigand C, Galzi JL, Gaub MP, Pencreach E, Guenot D (2014). Hypoxia differentially regulated CXCR4 and CXCR7 signaling in colon cancer. Mol Cancer 13:58.

Ruggiu F, Gizzi P, Galzi JL, Hibert M, Haiech J,  Baskin I, Horvath D, Marcou G, Varnek A (2014). Quantitative structure-property relationship modelling : a valuable support in high-throughput screening quality control. Anal Chem 86:2510–2520.

Ferret C, Sterckeman T, Cornu J-Y, Gangloff S, Schalk IJ, Geoffroy VA (2014). Siderophore promoted dissolution of smectite by fluorescent Pseudomonas. Environ Microbiol Reports 6:459-467.

Hoegy F, Mislin GLA, Schalk IJ (2014). Pyoverdine and pyochelin measurements. Methods Mol Biol 1149:293-301.

Hoegy F, Schalk IJ (2014). Monitoring iron uptake by siderophores. Methods Mol Biol 1149:337-346.

Maspoli A, Wenner N, Mislin GL, Reimmann C (2014). Functional analysis of pyochelin-/enantiopyochelin-related genes from a pathogenicity island of Pseudomonas aeruginosa strain PA14. Biometals 27:559-573.

Freund G, Desplancq D, Stoessel A, Weinsanto R, Sibler AP, Robin G, Martineau P, Didier P, Wagner J, Weiss E (2014). Generation of an intrabody-based reagent suitable for imaging endogenous proliferating cell nuclear antigen in living cancer cells. J Mol Recognit 27:549-558.

Zanier K, Stutz C, Kintscher S, Reinz E, Sehr P, Bulkescher J, Hoppe-Seyler K, Travé G, Hoppe-Seyler F (2014). The E6AP Binding Pocket of the HPV16 E6 Oncoprotein Provides a Docking Site for a Small Inhibitory Peptide Unrelated to E6AP, Indicating Druggability of E6. PLoS One 9:e112514.

Tsakogiannis D, Kyriakopoulou Z, Darmis F, Ruether IGA, Dimitriou TG, Orfanoudakis G, Panotopoulou E, Markoulatos P (2014). Prevalence o HPV16 E1-1374^63nt variants in Greek women. J Med Virol 86:778-84.

Kutuzov MM, Khodyreva SN, Schreiber V, Lavrik OI (2014). The role of PARP2 in DNA repair. Mol Biol (Mosk) 48:561-72.

Beck C, Robert I, Reina-San-Martin B, Schreiber V, Dantzer F (2014). Poly(ADP-ribose) polymerases in double-strand break repair : Focus on PARP1, PARP2 and PARP3. Exp Cell Res 15:18-25.

Logez C, Berger S, Legros C, Cohen W, Delagrange P, Boutin JA, Ferry G, Simonin F*, Wagner R* (2014). Recombinant human MT1 receptor purified in mixed detergents shows a similar pharmacology than in membranes from mammalian cells. PLoS One 9:e100616.

Illuzzi G, Fouquerel E, Amé JC, Noll A, Rehmet K, Nasheuer HP, Dantzer F, Schreiber V (2014). PARG is dispensable for recovery from transient replicative stress but required to prevent detrimental accumulation of poly(ADP-ribose) upon prolonged replicative stress. Nucleic Acids Res 15:18-25.

Cerutti R, Pirinen E, Lamperti C, Marchet S, Sauve AA, Li W, Leoni V, Schon EA, Dantzer F, Auwerx J, Viscomi C, Zeviani M (2014). NAD(+)-dependent activation of Sirt1 corrects the phenotype in a mouse model of mitochondrial disease. Cell Metab 19:1042-1049.

De Vos M, El Ramy R, Quénet D, Wolf P, Spada F, Magroun N, Babbio F, Schreiber V, Leonhardt H, Bonapace IM, Dantzer F (2014). Poly(ADP-ribose) polymerase 1 (PARP1) associates with E3 ubiquitin-protein ligase UHRF1 and modulates UHRF1 biological functions. J Biol Chem 289:16223-38.

Beck C, Boehler C, Guirouilh Barbat J, Bonnet ME, Illuzzi G, Ronde P, Gauthier LR, Magroun N, Rajendran A, Lopez BS, Scully R, Boussin FD, Schreiber V, Dantzer F (2014). PARP3 affects the relative contribution of homologous recombination and nonhomologous end-joining pathways. Nucleic Acids Res 42:5616-5632.

Das BB, Huang SY, Murai J, Rehman I, Ame JC, Sengupta S, Das SK, Majumdar P, Zhang H, Biard D, Majumder HK, Schreiber V, Pommier Y (2014). PARP1-TDP1 coupling for the repair of topoisomerase I-induced DNA damage. Nucleic Acids Res 42:4435-4449.

Michel G, Matthes HW, Hachet-Haas M, El Baghdadi K, de Mey J, Pepperkok R, Simpson JC, Galzi JL*, Lecat S* (2014). Plasma membrane translocation of REDD1 governed by GPCRs contributes to mTORC1 activation. J Cell Sci 127:773-87.

Mislin GL, Schalk IJ (2014). Siderophore-dependent iron uptake systems as gates for antibiotic Trojan horse strategies against Pseudomonas aeruginosa. Metallomics 6:408-420.

Postupalenko V, Sibler AP, Desplancq D, Nomine Y, Spehner D, Schultz P, Weiss E, Zuber G (2014). Intracellular delivery of functionally active proteins using self-assembling pyridylthiourea-polyethylenimine. J Control Release 178:86-94.

Cornu JY, Elhabiri M, Ferret C, Geoffroy VA, Jezequel K, Leva Y, Lollier M, Schalk IJ, Lebeau T (2014). Contrasting effects of pyoverdine on the phytoextraction of Cu and Cd in a calcareous soil. Chemosphere 103:212-219.

Noël S, Hoegy F, Rivault F, Rognan D, Schalk IJ, Mislin GL (2014). Synthesis and biological properties of thiazole-analogues of pyochelin, a siderophore of Pseudomonas aeruginosa. Bioorg Med Chem Lett 24:132-135.

Baco E, Hoegy F, Schalk IJ, Mislin GL (2014). Diphenyl-benzo[1,3]dioxole-4-carboxylic acid pentafluorophenyl ester : a convenient catechol precursor in the synthesis of siderophore vectors suitable for antibiotic Trojan horse strategies. Org Biomol Chem 12:749-757.

Bender A, Weber M (2013). DNA methylation: an identity card for brain cells. Genome Biol 14:131.

Cornu JY, Elhabiri M, Ferret C, Geoffroy VA, Jezequel K, Leva Y, Lollier M, Schalk IJ, Lebeau T (2013). Contrasting effects of pyoverdine on the phytoextraction of Cu and Cd in a calcareous soil. Chemosphere 103:212-9.

Guillon L, Altenburger S, Graumann PL, Schalk IJ (2013). Deciphering Protein Dynamics of the Siderophore Pyoverdine Pathway in Pseudomonas aeruginosa. PLoS One 8:e79111.

Julou T, Mora T, Guillon L, Croquette V, Schalk IJ, Bensimon D, Desprat N (2013). Cell-cell contacts confine public goods diffusion inside Pseudomonas aeruginosa clonal microcolonies. Proc Natl Acad Sci U S A 31:12577-12582.

Daubeuf F*, Hachet-Haas M*, Gizzi P, Gasparik V, Bonnet D, Hibert M, Frossard N, Galzi JL (2013). Antedrugs of the chemokine CXCL12 neutraligand show selectivity in an in vivo model of asthma. J Biol Chem 288:11865-11876.

Doebelin C, Wagner P, Bertin I, Simonin F, Schmitt M, Bihel F, Bourguignon JJ (2013). Trisubstitution of pyridine through sequential and regioselective palladium cross-coupling reactions affording analogs of known GPR54 antagonists. RSC Adv 3:10296-10300.

Puglia AL, Rezende AG, Jorge SA, Wagner R, Pereira CA, Astray RM (2013). Quantitative RT-PCR for titration of replication-defective recombinant Semliki Forest virus. J Virol Methods 193:647-652.

Tsakogiannis D, Papadopoulou A, Kontostathi G, Ruether IGA, Kyriakopoulou Z, Dimitriou TG, Orfanoudakis G, Markoulatos P (2013). Molecular and evolutionary analysis of HPV16 E6 and E7 genes in Greek women. J Med Microbiol 62:1688-1696.

Robert I, Karicheva O, Reina San Martin B, Schreiber V, Dantzer F (2013). Functional aspects of PARylation in induced and programmed DNA repair processes : Preserving genome integrity and modulating physiological events. Mol Aspects Med 34:1138-1152.

Castiel A, Visochek L, Mittelman L, Zilberstein Y, Dantzer F, Izraeli S, Cohen-Armon M (2013). Cell death associated with abnormal mitosis observed by confocal imaging in live cancer cells. J Vis Exp 78:e50568.

Legrand AJ, Choul-Li S, Spriet C, Idziorek T, Vicogne D, Drobecq H, Dantzer F, Villeret V, Aumercier M (2013). The level of Ets-1 protein is regulated by poly(ADP-ribose) polymerase-1 (PARP-1) in cancer cells to prevent DNA damage. PLoS One 8:e55883.

Kutuzov MM, Khodyreva SN, Amé JC, Ilina ES, Sukhanova MV, Schreiber V, Lavrik OI (2013). Interaction of PARP-2 with DNA structures mimicking DNA repair intermediates and consequences on activity of base excision repair proteins. Biochimie 95:1208-1215.

Farrés J, Martín-Caballero J, Martínez C, Lozano JJ, Llacuna L, Ampurdanés C, Ruiz-Herguido C, Dantzer F, Schreiber V, Villunger A, Bigas A, Yélamos J (2013). Parp-2 is required to maintain hematopoiesis following sublethal γ-irradiation in mice. Blood 122:44-54.

Elhabazi K, Humbert JP, Bertin I, Schmitt M, Bihel F, Bourguignon  JJ, Bucher B, Becker JAJ, Sorg T, Meziane H, Petit-Demoulière B, Ilien B, Simonin F (2013). Endogenous mammalian RF-amide peptides, including PrRP, kisspeptin and 26RFa, modulate nociception and morphine analgesia via NPFF receptors. Neuropharmacol75:164-171.

Freund G, Sibler AP, Desplancq D, Oulad-Abdelghani M, Vigneron M, Gannon J, Van Regenmortel MH, Weiss E (2013). Targeting endogenous nuclear antigens by electrotransfer of monoclonal antibodies in living cells. MAbs 5:518-522.

Daval SB, Kellenberger E, Bonnet D, Utard V, Galzi JL, Ilien B (2013). Exploration of the orthosteric/allosteric interface in human M1 muscarinic receptors by bitopic fluorescent ligands. Mol Pharmacol84:71-85.

Bornert O, Møller TC, Bœuf J, Candusso MP, Wagner R, Martinez KL, Simonin F (2013). Identification of a novel protein-protein interaction motif mediating interaction of gpcr-associated sorting proteins with g protein-coupled receptors. PloS One8:e56336.

Zanier K, Charbonnier S, Ould M’hamed ould Sidi A, McEwen AG, Giovanna Ferrario M, Poussin-Courmontagne P, Cura V, Brimer N, Ould Babah K, Ansari T, Muller I, Stote RH, Cavarelli J, Vande Pol S, Travé G (2013). Structural basis for hijacking of cellular LxxLL motifs by papillomavirus E6 oncoproteins. Science 339:694-8.

Rinaldi AS, Freund G, Desplancq D, Sibler AP, Baltzinger M, Rochel N, Mely Y, Didier P, Weiss E (2013). The use of fluorescent intrabodies to detect endogenous gankyrin in living cancer cells. Exp Cell Res 319:838-849.

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Schalk IJ, Guillon L (2013). Pyoverdine biosynthesis and secretion in Pseudomonas aeruginosa : implications for metal homeostasis. Environ Microbiol 15:1661-1673.

Schalk IJ, Guillon L (2013). Fate of ferrisiderophores after import across bacterial outer membranes : different iron release strategies are observed in the cytoplasm or periplasm depending on the siderophore pathways. Amino Acids 5:1267-1277.

Szatkowski C, Vallet J, Dormishian M, Messaddeq N, Valet P, Boulberdaa M, Metzger D, Chambon P, Nebigil CG (2013). Prokineticin receptor 1 as a novel suppressor of preadipocyte proliferation and differentiation to control obesity. PLoS One 8(12):e81175.

Dormishian M, Turkeri G, Urayama K, Nguyen TL, Boulberdaa M, Messaddeq N, Renault G, Henrion D, Nebigil CG (2013). Prokineticin receptor-1 is a new regulator of endothelial insulin uptake and capillary formation to control insulin sensitivity and cardiovascular and kidney functions. J Am Heart Assoc 2(5):e000411.

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